<?xml version="1.0" encoding="ISO-8859-1"?>
<emdEntry accessCode="1086">
  <admin>
    <lastUpdate>2004-06-03</lastUpdate>
  </admin>
  <deposition>
    <mapReleaseDate>2004-09-07</mapReleaseDate>
    <replaceExistingEntry>false</replaceExistingEntry>
    <primaryReference published="true">
      <journalArticle>
        <authors>Petr G. Leiman, Paul R. Chipman, Victor A.
          Kostyuchenko,       Vadim V. Mesyanzhinov, Michael G. Rossmann</authors>
        <articleTitle>Three-dimensional rearrangement of proteins in
          the       tail of bacteriophage T4 on attachment to a host cell</articleTitle>
        <journal>CELL</journal>
        <volume>118</volume>
        <firstPage>419</firstPage>
        <lastPage>429</lastPage>
      </journalArticle>
    </primaryReference>
  </deposition>
  <map>
    <file format="CCP4" sizeKb="67109" type="map">emd_1086.map</file>
    <dataType>float (32-bit)</dataType>
    <dimensions>
      <numColumns>256</numColumns>
      <numRows>   256</numRows>
      <numSections>   256</numSections>
    </dimensions>
    <origin>
      <originCol units="A">  -128</originCol>
      <originRow units="A">  -128</originRow>
      <originSec units="A">  -127</originSec>
    </origin>
    <limit>
      <limitCol units="A">   127</limitCol>
      <limitRow units="A">   127</limitRow>
      <limitSec units="A">   128</limitSec>
    </limit>
    <spacing>
      <spacingCol units="A">   256</spacingCol>
      <spacingRow units="A">   256</spacingRow>
      <spacingSec units="A">   256</spacingSec>
    </spacing>
    <cell>
      <cellA units="A">1006.810</cellA>
      <cellB units="A">1006.810</cellB>
      <cellC units="A">1006.810</cellC>
      <cellAlpha units="degrees">  90.000</cellAlpha>
      <cellBeta units="degrees">  90.000</cellBeta>
      <cellGamma units="degrees">  90.000</cellGamma>
    </cell>
    <axisOrder>
      <axisOrderFast>X</axisOrderFast>
      <axisOrderMedium>Y</axisOrderMedium>
      <axisOrderSlow>Z</axisOrderSlow>
    </axisOrder>
    <statistics>
      <minimum>   -11.22305</minimum>
      <maximum>    14.63493</maximum>
      <average>     0.00000</average>
      <std>     0.00000</std>
    </statistics>
    <spaceGroupNumber>     1</spaceGroupNumber>
    <details>   Createdby MAPMAN V. 010122/7.0at Tue Mar 23 11:36:56
      2004forA. Nonymous// Created by IMAGIC: CCP4 image =
      angles-aprq-unbin-1-deg-no-ctf-align-4A.map03-06-20 15:45:49 //  </details>
    <pixelSpacing>
      <pixelX units="A">3.93285</pixelX>
      <pixelY units="A">3.93285</pixelY>
      <pixelZ units="A">3.93285</pixelZ>
    </pixelSpacing>
    <annotationDetails>CryoEM density of the T4 tail with contracted
      sheath and the baseplate in the star conformation.</annotationDetails>
  </map>
  <sample>
    <name>T4 phages treated with 3 M urea</name>
    <aggregationState>singleParticle</aggregationState>
    <numComponents>1</numComponents>
    <molWtExp units="MDa">220</molWtExp>
    <molWtTheo units="MDa">220</molWtTheo>
    <molWtMethod>Estimate</molWtMethod>
    <sampleComponentList>
      <sampleComponent componentID="1">
        <entry>virus</entry>
        <sciName>bacteriophage T4</sciName>
        <synName>phage T4</synName>
        <molWtTheo units="MDa">220</molWtTheo>
        <molWtExp units="MDa">220</molWtExp>
        <details>treated with 3 M urea</details>
        <virus>
          <hostCategory>BACTERIA(EUBACTERIA)</hostCategory>
          <hostSpecies>Escherichia coli</hostSpecies>
          <class>VIRION</class>
          <isolate>STRAIN</isolate>
          <refIctvdb>02.043.0.01.005</refIctvdb>
          <enveloped>false</enveloped>
          <empty>false</empty>
        </virus>
      </sampleComponent>
    </sampleComponentList>
  </sample>
  <experiment>
    <vitrification>
      <cryogenName>ETHANE</cryogenName>
      <temperature units="Kelvin">100</temperature>
    </vitrification>
    <imaging>
      <microscope>FEI/PHILIPS CM300FEG/T</microscope>
      <specimenHolder>Side entry liquid nitrogen-cooled cryo specimen holder</specimenHolder>
      <specimenHolderModel>GATAN LIQUID NITROGEN</specimenHolderModel>
      <date>2002-01-06</date>
      <acceleratingVoltage units="kV">300</acceleratingVoltage>
      <illuminationMode>SPOT SCAN</illuminationMode>
      <imagingMode>BRIGHT FIELD</imagingMode>
      <nominalDefocusMin units="nM">500</nominalDefocusMin>
      <nominalDefocusMax units="nM">3400</nominalDefocusMax>
      <tiltAngleMin units="degrees">0</tiltAngleMin>
      <tiltAngleMax units="degrees">0</tiltAngleMax>
      <nominalMagnification>45000</nominalMagnification>
      <calibratedMagnification>47000</calibratedMagnification>
      <electronSource>FIELD EMISSION GUN</electronSource>
      <electronDose units="e/A**2">20</electronDose>
      <energyFilter>FEI</energyFilter>
      <temperature units="Kelvin">100</temperature>
      <detector>Kodak SO163 film</detector>
    </imaging>
    <imageScans>
      <numDigitalImages>100</numDigitalImages>
      <samplingSize units="microns">3.93285</samplingSize>
      <quantBitNumber>8</quantBitNumber>
      <scanner>ZEISS SCAI</scanner>
    </imageScans>
    <fitting>
      <details>The components were separately fitted using Situs v.2.0</details>
    </fitting>
    <samplePreparation>
      <buffer>
        <details>H2O</details>
        <sampleConc units="mg/ml">5</sampleConc>
        <ph>7.5</ph>
      </buffer>
      <sampleSupportDetails>200 mesh cupper grid</sampleSupportDetails>
    </samplePreparation>
  </experiment>
  <processing>
    <reconstruction>
      <algorithm>back-projection</algorithm>
      <software>Spider</software>
      <ctfCorrection>Each particle</ctfCorrection>
      <resolutionByAuthor>16</resolutionByAuthor>
      <resolutionMethod>FSC at 0.5 cut-off</resolutionMethod>
      <eulerAnglesDetails>theta 45 degrees, phi 180 degrees</eulerAnglesDetails>
    </reconstruction>
    <emDataSet>
      <singleParticle>
        <numProjections>1965</numProjections>
      </singleParticle>
    </emDataSet>
  </processing>
</emdEntry>
